Access Live FHIR Data in AWS Lambda (with IntelliJ IDEA)

AWS Lambda is a compute service that lets you build applications that respond quickly to new information and events. AWS Lambda functions can work with live FHIR data when paired with the CData JDBC Driver for FHIR. This article describes how to connect to and query FHIR data from an AWS Lambda function built with Maven in IntelliJ.

With built-in optimized data processing, the CData JDBC Driver offers unmatched performance for interacting with live FHIR data. When you issue complex SQL queries to FHIR, the driver pushes supported SQL operations, like filters and aggregations, directly to FHIR and utilizes the embedded SQL engine to process unsupported operations client-side (often SQL functions and JOIN operations). In addition, its built-in dynamic metadata querying allows you to work with and analyze FHIR data using native data types.

Gather Connection Properties and Build a Connection String

Download the CData JDBC Driver for FHIR installer, unzip the package, and run the JAR file to install the driver. Then gather the required connection properties.

Set URL to the Service Base URL of the FHIR server. This is the address where the resources are defined in the FHIR server you would like to connect to. Set ConnectionType to a supported connection type. Set ContentType to the format of your documents. Set AuthScheme based on the authentication requirements for your FHIR server.

Generic, Azure-based, AWS-based, and Google-based FHIR server implementations are supported.

Sample Service Base URLs

• Generic: http://my_fhir_server/r4b/
• Azure: https://MY_AZURE_FHIR.azurehealthcareapis.com/
• AWS: https://healthlake.REGION.amazonaws.com/datastore/DATASTORE_ID/r4/
• Google: https://healthcare.googleapis.com/v1/projects/PROJECT_ID/locations/LOCATION/datasets/DATASET_ID/fhirStores/FHIR_STORE_ID/fhir/

Generic FHIR Instances

The product supports connections to custom instances of FHIR. Authentication to custom FHIR servers is handled via OAuth (read more about OAuth in the Help documentation. Before you can connect to custom FHIR instances, you must set ConnectionType to Generic.

NOTE: To use the JDBC driver in an AWS Lambda function, you will need a license (full or trial) and a Runtime Key (RTK). For more information on obtaining this license (or a trial), contact our sales team.

Built-in Connection String Designer

For assistance constructing the JDBC URL, use the connection string designer built into the FHIR JDBC Driver. Double-click the JAR file or execute the jar file from the command line.

Fill in the connection properties (including the RTK) and copy the connection string to the clipboard.

Create a Project in IntelliJ

1. In IntelliJ IDEA, click New Project.
2. Select "Maven Archetype" from the Generators
3. Name the project and select "maven.archetypes:maven-archetype-quickstart" Archetype.
4. Click "Create"

Install the CData JDBC Driver for FHIR JAR File

Use the following Maven command from the project's root folder to install JAR file in the project.

Add Dependencies

Within the Maven project's pom.xml file, add AWS and the CData JDBC Driver for FHIR as dependencies (within the <dependencies> element) using the following XML.

• AWS <dependency> <groupId>com.amazonaws</groupId> <artifactId>aws-lambda-java-core</artifaceId> <version>1.2.2</version> <!--Replace with the actual version--> </dependency>
• CData JDBC Driver for FHIR <dependency> <groupId>org.cdata.connectors</groupId> <artifactId>cdata-fhir-connector</artifaceId> <version>23</version> <!--Replace with the actual version--> </dependency>

Create an AWS Lambda Function

For this sample project, we create two source files: CDataLambda.java and CDataLambdaTest.java.

Lambda Function Definition

1. Update CDataLambda to implement the RequestHandler interface from the AWS Lambda SDK. You will need to add the handleRequest method, which performs the following tasks when the Lambda function is triggered:
   1. Constructs a SQL query using the input.
   2. Registers the CData JDBC driver for FHIR.
   3. Establishes a connection to FHIR using JDBC.
   4. Executes the SQL query on FHIR.
   5. Prints the results to the console.
   6. Returns an output message.
2. Add the following import statements to the Java class: import java.sql.Connection; import java.sql.DriverManager; import java.sql.ResultSet; import java.sql.ResultSetMetaData; import java.sql.SQLException; import java.sql.Statement;

3. Replace the body of the handleRequest method with the code below. Be sure to fill in the connection string in the DriverManager.getConnection method call.

   String query = "SELECT * FROM " + input; try { Class.forName("cdata.jdbc.fhir.FHIRDriver"); cdata.jdbc.fhir.FHIRDriver driver = new cdata.jdbc.fhir.FHIRDriver(); DriverManager.registerDriver(driver); } catch (SQLException ex) { } catch (ClassNotFoundException e) { throw new RuntimeException(e); } Connection connection = null; try { connection = DriverManager.getConnection("jdbc:cdata:fhir:RTK=52465...;URL=http://test.fhir.org/r4b/;ConnectionType=Generic;ContentType=JSON;AuthScheme=None;"); } catch (SQLException ex) { context.getLogger().log("Error getting connection: " + ex.getMessage()); } catch (Exception ex) { context.getLogger().log("Error: " + ex.getMessage()); } if(connection != null) { context.getLogger().log("Connected Successfully!\n"); } ResultSet resultSet = null; try { //executing query Statement stmt = connection.createStatement(); resultSet = stmt.executeQuery(query); ResultSetMetaData metaData = resultSet.getMetaData(); int numCols = metaData.getColumnCount(); //printing the results while(resultSet.next()) { for(int i = 1; i <= numCols; i++) { System.out.printf("%-25s", (resultSet.getObject(i) != null) ? resultSet.getObject(i).toString().replaceAll("\n", "") : null ); } System.out.print("\n"); } } catch (SQLException ex) { System.out.println("SQL Exception: " + ex.getMessage()); } catch (Exception ex) { System.out.println("General exception: " + ex.getMessage()); } return "query: " + query + " complete";

Deploy and Run the Lambda Function

Once you build the function in Intellij, you are ready to deploy the entire Maven project as a single JAR file.

1. In IntelliJ, use the mvn install command to build the SNAPSHOT JAR file.
2. Create a new function in AWS Lambda (or open an existing one).
3. Name the function, select an IAM role, and set the timeout value to a high enough value to ensure the function completes (depending on the result size of your query).
4. Click "Upload from" -> ".zip file" and select your SNAPSHOT JAR file.
5. In the "Runtime settings" section, click "Edit" and set Handler to your "handleRequest" method (e.g. package.class::handleRequest)
6. You can now test the function. Set the "Event JSON" field to a table name and click, click "Test"

Free Trial & More Information

Download a free, 30-day trial of the CData JDBC Driver for FHIR and start working with your live FHIR data in AWS Lambda. Reach out to our Support Team if you have any questions.