Analyze Amazon Athena Data in R

Access Amazon Athena data with pure R script and standard SQL. You can use the CData ODBC Driver for Amazon Athena and the RODBC package to work with remote Amazon Athena data in R. By using the CData Driver, you are leveraging a driver written for industry-proven standards to access your data in the popular, open-source R language. This article shows how to use the driver to execute SQL queries to Amazon Athena data and visualize Amazon Athena data in R.

Install R

You can complement the driver's performance gains from multi-threading and managed code by running the multithreaded Microsoft R Open or by running R linked with the BLAS/LAPACK libraries. This article uses Microsoft R Open (MRO).

Connect to Amazon Athena as an ODBC Data Source

Information for connecting to Amazon Athena follows, along with different instructions for configuring a DSN in Windows and Linux environments.

Authenticating to Amazon Athena

To authorize Amazon Athena requests, provide the credentials for an administrator account or for an IAM user with custom permissions: Set AccessKey to the access key Id. Set SecretKey to the secret access key.

Note: Though you can connect as the AWS account administrator, it is recommended to use IAM user credentials to access AWS services.

Obtaining the Access Key

To obtain the credentials for an IAM user, follow the steps below:

1. Sign into the IAM console.
2. In the navigation pane, select Users.
3. To create or manage the access keys for a user, select the user and then select the Security Credentials tab.

To obtain the credentials for your AWS root account, follow the steps below:

1. Sign into the AWS Management console with the credentials for your root account.
2. Select your account name or number and select My Security Credentials in the menu that is displayed.
3. Click Continue to Security Credentials and expand the Access Keys section to manage or create root account access keys.

Authenticating from an EC2 Instance

If you are using the CData Data Provider for Amazon Athena 2018 from an EC2 Instance and have an IAM Role assigned to the instance, you can use the IAM Role to authenticate. To do so, set UseEC2Roles to true and leave AccessKey and SecretKey empty. The CData Data Provider for Amazon Athena 2018 will automatically obtain your IAM Role credentials and authenticate with them.

Authenticating as an AWS Role

In many situations it may be preferable to use an IAM role for authentication instead of the direct security credentials of an AWS root user. An AWS role may be used instead by specifying the RoleARN. This will cause the CData Data Provider for Amazon Athena 2018 to attempt to retrieve credentials for the specified role. If you are connecting to AWS (instead of already being connected such as on an EC2 instance), you must additionally specify the AccessKey and SecretKey of an IAM user to assume the role for. Roles may not be used when specifying the AccessKey and SecretKey of an AWS root user.

Authenticating with MFA

For users and roles that require Multi-factor Authentication, specify the MFASerialNumber and MFAToken connection properties. This will cause the CData Data Provider for Amazon Athena 2018 to submit the MFA credentials in a request to retrieve temporary authentication credentials. Note that the duration of the temporary credentials may be controlled via the TemporaryTokenDuration (default 3600 seconds).

Connecting to Amazon Athena

In addition to the AccessKey and SecretKey properties, specify Database, S3StagingDirectory and Region. Set Region to the region where your Amazon Athena data is hosted. Set S3StagingDirectory to a folder in S3 where you would like to store the results of queries.

If Database is not set in the connection, the data provider connects to the default database set in Amazon Athena.

When you configure the DSN, you may also want to set the Max Rows connection property. This will limit the number of rows returned, which is especially helpful for improving performance when designing reports and visualizations.

Windows

If you have not already, first specify connection properties in an ODBC DSN (data source name). This is the last step of the driver installation. You can use the Microsoft ODBC Data Source Administrator to create and configure ODBC DSNs.

Linux

If you are installing the CData ODBC Driver for Amazon Athena in a Linux environment, the driver installation predefines a system DSN. You can modify the DSN by editing the system data sources file (/etc/odbc.ini) and defining the required connection properties.

/etc/odbc.ini

For specific information on using these configuration files, please refer to the help documentation (installed and found online).

Load the RODBC Package

To use the driver, download the RODBC package. In RStudio, click Tools -> Install Packages and enter RODBC in the Packages box.

After installing the RODBC package, the following line loads the package:

Note: This article uses RODBC version 1.3-12. Using Microsoft R Open, you can test with the same version, using the checkpoint capabilities of Microsoft's MRAN repository. The checkpoint command enables you to install packages from a snapshot of the CRAN repository, hosted on the MRAN repository. The snapshot taken Jan. 1, 2016 contains version 1.3-12.

Connect to Amazon Athena Data as an ODBC Data Source

You can connect to a DSN in R with the following line:

Schema Discovery

The driver models Amazon Athena APIs as relational tables, views, and stored procedures. Use the following line to retrieve the list of tables:

Execute SQL Queries

Use the sqlQuery function to execute any SQL query supported by the Amazon Athena API.

You can view the results in a data viewer window with the following command:

Plot Amazon Athena Data

You can now analyze Amazon Athena data with any of the data visualization packages available in the CRAN repository. You can create simple bar plots with the built-in bar plot function: